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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16714927_16716578_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16714927 - 16716578
Intron Length:
1652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTTTGTGTAATT
Flanking Amino Acid:
EKPKHETYEKADVIVANPYW
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
75.5
0.57
1
71.2
43.2
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
55
0.24
2.3
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004603
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004723
16605513 - 16717275
111763