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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16723524_16725135_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16723524 - 16725135
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCTTC
5'SS Class:
major
3'SS Sequence:
TGCATGTGGTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTGCATTTATT
Flanking Amino Acid:
QQSLNESALRRQKENAPCEN
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
71
35.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
58.5
0.19
1.2
57.2
47.4
Minor 5ss
49.1
-0.1
2.7
66.9
44.7
Minor BPS
56.7
0.29
2
81.12
40.6

Associated Gene:

Gene:
ODF2L
Ensembl Gene ID:
ENSAPLG00000004590
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018298
16720487 - 16744386
23900
ENSAPLT00000004719
16720487 - 16744386
23900