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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16735923_16736703_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16735923 - 16736703
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTATCTAACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTGCCTATCT
Flanking Amino Acid:
MLEIQTEDLKKQVTSLLEDL
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
54.6
0.1
1.1
53.7
39.6
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
49.1
0.01
2.3
76.35
46.1

Associated Gene:

Gene:
ODF2L
Ensembl Gene ID:
ENSAPLG00000004590
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028708
16728834 - 16761223
32390
ENSAPLT00000018298
16720487 - 16744386
23900
ENSAPLT00000004719
16720487 - 16744386
23900