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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16740779_16741720_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16740779 - 16741720
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTGATT
5'SS Class:
major
3'SS Sequence:
TGTACTATAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TGTACTATAATA
Flanking Amino Acid:
ESALEEGRKMVAEEFEKLSY
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
69.7
40
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
64.6
0.33
1
59.7
40.4
Minor 5ss
44.5
-0.6
3.2
62.8
43.8
Minor BPS
58.6
0.27
1.6
69.91
36.2

Associated Gene:

Gene:
ODF2L
Ensembl Gene ID:
ENSAPLG00000004590
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028708
16728834 - 16761223
32390
ENSAPLT00000018298
16720487 - 16744386
23900
ENSAPLT00000004719
16720487 - 16744386
23900