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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16741847_16744196_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16741847 - 16744196
Intron Length:
2350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTAAGCT
Flanking Amino Acid:
KKQLLCRFHHNEKRHEISLK
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
59.9
0.39
1.9
80.69
41.2

Associated Gene:

Gene:
ODF2L
Ensembl Gene ID:
ENSAPLG00000004590
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028708
16728834 - 16761223
32390
ENSAPLT00000018298
16720487 - 16744386
23900
ENSAPLT00000004719
16720487 - 16744386
23900