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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16744250_16758197_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16744250 - 16758197
Intron Length:
13948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
SLKELENSLQRDKVKQILSQ
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
ODF2L
Ensembl Gene ID:
ENSAPLG00000004590
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028708
16728834 - 16761223
32390