Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16805697_16809227_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16805697 - 16809227

Intron Length:

3531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTAG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGTGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

AAGAGCTTAATT

Flanking Amino Acid:

PGLPGLPGPKGPKGDPGFSP

Intron Amino Acid Position:

506

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

80.1

30.7

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

70.8

0.47

68.3

37.5

Minor 5ss

34.1

-1.8

2.8

39.6

46.4

Minor BPS

55.1

0.24

1.8

68.29

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041548

16782401 - 16831473

49073

ENSAPLT00000017322

16782401 - 16820341

37941