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Intron Name: Anas_platyrhynchos_platyrhynchos_8_16810354_16816289_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16810354 - 16816289

Intron Length:

5936

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTCC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTACCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

GTTTCTCTACCT

Flanking Amino Acid:

QGPPGIKGQKGHKGYLGLQG

Intron Amino Acid Position:

542

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.6

33.4

Major BPS

81.8

0.79

1.1

34.5

Major PPT

80.4

0.68

0.8

74.1

29.8

Minor 5ss

-1.4

3.2

50.9

45.8

Minor BPS

58.4

0.34

81.32

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041548

16782401 - 16831473

49073

ENSAPLT00000017322

16782401 - 16820341

37941