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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16819629_16819820_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16819629 - 16819820
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TATTCCAAAATA
Flanking Amino Acid:
EGNPGPKGAR*
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
62
0.3
1
62.3
30.4
Major PPT
90.2
0.9
0.6
87.8
22.4
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
58.2
0.25
1.9
73.57
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031231
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017322
16782401 - 16820341
37941