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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16819629_16821774_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16819629 - 16821774
Intron Length:
2146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTGTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAG
U12 Branch Point Sequence:
AAGCACTGAATT
Flanking Amino Acid:
EGNPGPKGARGFIGPPGVAG
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
60.5
0.26
1.7
69.7
44.2
Major PPT
77.1
0.61
0.9
68.5
42.1
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
49.3
0.03
1.6
63.57
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031231
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041548
16782401 - 16831473
49073