About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16822495_16825829_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16822495 - 16825829
Intron Length:
3335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TGTTCTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
AAAACATTATCT
Flanking Amino Acid:
RGKRGPKGRQGFPGDFGNRG
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
80.3
0.68
0.9
77.5
36.9
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
49.2
0.02
1.9
67.25
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031231
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041548
16782401 - 16831473
49073