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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16912368_16913186_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16912368 - 16913186
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
CTGTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTGAATTTAATA
Flanking Amino Acid:
EPKVLMDECMIQDGSWHKTQ
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.7
33.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.1
0.56
1
68.6
42
Minor 5ss
35.5
-1.6
2.7
40.3
40.5
Minor BPS
54.8
0.15
1.5
61.68
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022674
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038917
16912152 - 16913524
1373