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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16917251_16918581_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16917251 - 16918581
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TATTTTTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GATTCAAAAAAA
Flanking Amino Acid:
SVHRPTTNKFINYLRNRARR
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
77.9
0.63
1
73.8
41.4
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
43.2
-0.5
2.1
57.45
40.8

Associated Gene:

Gene:
ZNHIT6
Ensembl Gene ID:
ENSAPLG00000003644
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003727
16913422 - 16948615
35194