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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16918686_16927490_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16918686 - 16927490
Intron Length:
8805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
AAGGCATTAACA
Flanking Amino Acid:
RRENSTIFNKKEQKFYWHLK
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
57.2
0.22
1.7
64.34
41.6

Associated Gene:

Gene:
ZNHIT6
Ensembl Gene ID:
ENSAPLG00000003644
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003727
16913422 - 16948615
35194