Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16927560_16928344_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16927560 - 16928344

Intron Length:

785

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGAGT

5'SS Class:

major

3'SS Sequence:

TCTTCTGTGAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGATTTTTATCT

Flanking Amino Acid:

PHCHAEYTLKRVPEDKTLTD

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.52

1.1

66.9

44.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

63.7

0.31

1.2

66.4

38.7

Minor 5ss

32.3

-2

3.5

48.9

46.9

Minor BPS

62.8

0.48

1.6

76.96

39.7

Associated Gene:

Gene:

ZNHIT6

Ensembl Gene ID:

ENSAPLG00000003644

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003727

16913422 - 16948615

35194