About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1693560_1698115_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1693560 - 1698115
Intron Length:
4556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCAGCTTTATCA
Flanking Amino Acid:
KRAERFSNSQFTLDRIPRSR
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.3
0.73
0.8
76
32.6
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
55
0.15
1.7
63.43
43.4

Associated Gene:

Gene:
CNN3
Ensembl Gene ID:
ENSAPLG00000011050
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018310
1643294 - 1698884
55591