About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16959637_16959738_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16959637 - 16959738
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTCCGCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CCGGCGCTGACC
Flanking Amino Acid:
AAALLCLARLALGSPCPAVC
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
68
42.9
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
71.1
0.47
0.8
64.6
30.8
Minor 5ss
34.7
-1.7
2.8
39.7
39.7
Minor BPS
39.9
-0.8
2.3
45.49
43.9

Associated Gene:

Gene:
CCN1
Ensembl Gene ID:
ENSAPLG00000003558
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003638
16957985 - 16959950
1966