About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16961085_17034988_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16961085 - 17034988
Intron Length:
73904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACAC
Flanking Amino Acid:
LRRTDGAHGWVEAMKRVLES
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
84
0.76
0.8
80.4
30.5
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
66.9
0.51
1.7
79.08
36.2

Associated Gene:

Gene:
DDAH1
Ensembl Gene ID:
ENSAPLG00000017443
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028435
16960351 - 17057075
96725