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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1698268_1698739_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1698268 - 1698739
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTTTTTTACA
Flanking Amino Acid:
PLSLLVVAGSGGHTTEILRL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
43.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
91.8
0.94
0.7
87.5
30
Minor 5ss
30.2
-2.3
2.6
34.3
41.4
Minor BPS
64.3
0.44
1.6
74.12
37.8

Associated Gene:

Gene:
CNN3
Ensembl Gene ID:
ENSAPLG00000011050
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018310
1643294 - 1698884
55591