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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17036279_17036864_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17036279 - 17036864
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGAA
5'SS Class:
major
3'SS Sequence:
TGCTCTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTAAAAATAATT
Flanking Amino Acid:
GAEILADTFKDYAVSTVPVH
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.4
33.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
76.9
0.6
0.9
71.7
38.2
Minor 5ss
34.4
-1.8
2.9
40.7
45.6
Minor BPS
46.4
-0.1
2
69.5
40.6

Associated Gene:

Gene:
DDAH1
Ensembl Gene ID:
ENSAPLG00000017443
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045435
16998585 - 17048558
49974
ENSAPLT00000028435
16960351 - 17057075
96725
ENSAPLT00000003584
16999000 - 17057075
58076