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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17048606_17056384_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
17048606 - 17056384
Intron Length:
7779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACGAA
5'SS Class:
major
3'SS Sequence:
TTATTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTATTTTTATCA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
61.8
39
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
85
0.79
0.9
85.9
33
Minor 5ss
33.6
-1.9
3.6
45.7
49.5
Minor BPS
66.1
0.5
1.5
75.42
36.1

Associated Gene:

Gene:
DDAH1
Ensembl Gene ID:
ENSAPLG00000017443
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028435
16960351 - 17057075
96725
ENSAPLT00000003584
16999000 - 17057075
58076