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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17056594_17061307_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17056594 - 17061307
Intron Length:
4714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TCGGCTGATACT
Flanking Amino Acid:
FGTDVNDLGQALERMRPYLC
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
38.1
-0.8
2.4
54.44
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003517
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003579
17055655 - 17063051
7397