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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17098311_17100567_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17098311 - 17100567
Intron Length:
2257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
TTTTTGCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGAGTGCTAACT
Flanking Amino Acid:
IMEIEKRGCQVVGLYRLCGS
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
82
0.72
0.8
74.6
36.4
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
44.6
-0.3
2.3
65.75
44.6

Associated Gene:

Gene:
SYDE2
Ensembl Gene ID:
ENSAPLG00000003510
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003577
17086742 - 17111978
25237