About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17104989_17105704_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17104989 - 17105704
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ACTGCCTCATCT
Flanking Amino Acid:
LLDCLPDVEKATLRMLLDHL
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
50.8
0.1
1.9
70.41
46.4

Associated Gene:

Gene:
SYDE2
Ensembl Gene ID:
ENSAPLG00000003510
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003577
17086742 - 17111978
25237