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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17120609_17121049_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17120609 - 17121049
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTCATTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTTCTTCATT
Flanking Amino Acid:
KIDSNSGKPVSKKPSHKYFI
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.2
31.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.8
0.51
1
73.6
36.9
Minor 5ss
42.3
-0.8
2.7
52.3
39.5
Minor BPS
61.8
0.45
1.7
77.24
40.1

Associated Gene:

Gene:
WDR63
Ensembl Gene ID:
ENSAPLG00000003460
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003538
17117519 - 17141659
24141