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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17122045_17123140_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17122045 - 17123140
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAATAAATAAAT
Flanking Amino Acid:
LEQHHHYKILDKAQSMNKQK
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81
0.7
0.9
73.1
41.8
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
45.7
-0.2
2.1
67.62
41.5

Associated Gene:

Gene:
WDR63
Ensembl Gene ID:
ENSAPLG00000003460
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003538
17117519 - 17141659
24141