About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17125828_17127662_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17125828 - 17127662
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCCCCTGTAATT
Flanking Amino Acid:
DIHWLPDHFEVNRMGITFEN
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.9
0.67
0.8
78
36.2
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
50.1
0.08
2
68.31
43.6

Associated Gene:

Gene:
WDR63
Ensembl Gene ID:
ENSAPLG00000003460
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003538
17117519 - 17141659
24141