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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17127792_17128474_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17127792 - 17128474
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGACA
5'SS Class:
major
3'SS Sequence:
AAAACATTTCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCTTTTTAAAA
Flanking Amino Acid:
NPSENNDTSEPSYMEDDEND
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
70.8
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.5
0.21
1
48.5
44
Minor 5ss
26.5
-2.7
3
31.6
42.4
Minor BPS
63.1
0.41
1.4
67.32
39.7

Associated Gene:

Gene:
WDR63
Ensembl Gene ID:
ENSAPLG00000003460
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003538
17117519 - 17141659
24141