About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17129378_17130250_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17129378 - 17130250
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGATC
5'SS Class:
major
3'SS Sequence:
TTCTCTCAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTCTCTCAATC
Flanking Amino Acid:
SCVRWHPIIHGIIAESATQR
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
71.5
38.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
74.7
0.56
0.9
75
33.7
Minor 5ss
37
-1.5
3.3
49
41.5
Minor BPS
66
0.48
1.5
75.84
34.3

Associated Gene:

Gene:
WDR63
Ensembl Gene ID:
ENSAPLG00000003460
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003538
17117519 - 17141659
24141