About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17137286_17140380_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17137286 - 17140380
Intron Length:
3095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTTTCCTTCATA
Flanking Amino Acid:
DEVDLSMEGIGHPEIFPLVF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.6
0.69
0.7
76.1
26
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
70.2
0.63
1.7
78.78
38.5

Associated Gene:

Gene:
WDR63
Ensembl Gene ID:
ENSAPLG00000003460
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003538
17117519 - 17141659
24141