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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17140420_17141531_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17140420 - 17141531
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CGTTGTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATACTGATAACA
Flanking Amino Acid:
RSSKGKRKQLDKKDEVDLSM
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.3
38.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
77.6
0.62
0.9
73.8
40.5
Minor 5ss
41.3
-1
2.5
47.3
42.8
Minor BPS
45.8
-0.3
2.2
60.96
38.5

Associated Gene:

Gene:
WDR63
Ensembl Gene ID:
ENSAPLG00000003460
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003538
17117519 - 17141659
24141