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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17149403_17150705_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17149403 - 17150705
Intron Length:
1303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAACTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTGTTCTGAACT
Flanking Amino Acid:
YDQIFFAINQYLQLPNISVG
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.1
0.47
0.9
67.9
37.9
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
68.7
0.66
1.5
80.19
41.9

Associated Gene:

Gene:
MCOLN3
Ensembl Gene ID:
ENSAPLG00000003304
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037400
17146794 - 17160532
13739
ENSAPLT00000003369
17147089 - 17160532
13444