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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17154414_17154485_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17154414 - 17154485
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTATA
5'SS Class:
major
3'SS Sequence:
TCTGTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATTATCT
Flanking Amino Acid:
SVVKGIRLQREFVSFFLYYY
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
74.1
38.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
69.9
0.45
0.9
63.7
38.1
Minor 5ss
32
-2.1
3
33
42.2
Minor BPS
49.6
0.05
2
72.75
43.6

Associated Gene:

Gene:
MCOLN3
Ensembl Gene ID:
ENSAPLG00000003304
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037400
17146794 - 17160532
13739
ENSAPLT00000003369
17147089 - 17160532
13444