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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17167957_17168738_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17167957 - 17168738
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCCTCTTTAAAT
Flanking Amino Acid:
LTIAFFMLLIRACCFSDISS
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.7
0.53
1
65.8
45.3
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
72.2
0.77
1.4
80.63
41.5

Associated Gene:

Gene:
MCOLN2
Ensembl Gene ID:
ENSAPLG00000003123
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046640
17167883 - 17181360
13478