About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17167957_17170458_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17167957 - 17170458
Intron Length:
2502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTAAACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTTTTAAAC
Flanking Amino Acid:
YDSIFYVINQYKQLKNISLG
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
62.8
0.29
1
56.9
42.5
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
62
0.36
1.4
68.43
37

Associated Gene:

Gene:
MCOLN2
Ensembl Gene ID:
ENSAPLG00000003123
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003185
17167738 - 17181360
13623