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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17168854_17170458_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17168854 - 17170458
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTTTC
5'SS Class:
major
3'SS Sequence:
GCTTTTAAACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTTTTAAAC
Flanking Amino Acid:
KSLAVKMSAEYKQLKNISLG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
75.1
36
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
62.8
0.29
1
56.9
42.5
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
62
0.36
1.4
68.43
37

Associated Gene:

Gene:
MCOLN2
Ensembl Gene ID:
ENSAPLG00000003123
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046640
17167883 - 17181360
13478