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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17171191_17171325_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17171191 - 17171325
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TTAAAACATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACTTTTTAAAA
Flanking Amino Acid:
NSSFFNLEFYRLIQVEISFK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65
0.34
1.1
60.4
44.7
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
65
0.47
1.3
69.01
37.3

Associated Gene:

Gene:
MCOLN2
Ensembl Gene ID:
ENSAPLG00000003123
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046640
17167883 - 17181360
13478
ENSAPLT00000003185
17167738 - 17181360
13623