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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17178959_17179494_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17178959 - 17179494
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CATGCTTTATTT
Flanking Amino Acid:
LITDSYDTIKKYQQSGFPVT
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
53.6
0.19
1.7
68.17
43.6

Associated Gene:

Gene:
MCOLN2
Ensembl Gene ID:
ENSAPLG00000003123
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046640
17167883 - 17181360
13478
ENSAPLT00000003185
17167738 - 17181360
13623