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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17193040_17197556_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17193040 - 17197556
Intron Length:
4517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
KLMKTVMTLLGAFVVCWTPG
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.3
0.77
0.8
75.9
38
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
LPAR3
Ensembl Gene ID:
ENSAPLG00000003113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003156
17192282 - 17197906
5625