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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1722716_1727065_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1722716 - 1727065
Intron Length:
4350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
GGTGTGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AAGGTTATAACT
Flanking Amino Acid:
YDDAVNADHLWGDPSMVQLN
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.9
0.52
1
64.5
45.9
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
48.8
-0
1.7
63.64
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011302
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011763
1717846 - 1733145
15300