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Intron Name: Anas_platyrhynchos_platyrhynchos_8_17228993_17230771_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

17228993 - 17230771

Intron Length:

1779

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

CTTGCTATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTAATCTAAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

80.1

34.8

Major BPS

84.4

0.85

34.5

Major PPT

76.7

0.6

0.8

74.2

35.2

Minor 5ss

37.5

-1.4

2.8

41.7

Minor BPS

0.23

1.8

74.62

41.7

Associated Gene:

Gene:

SSX2IP

Ensembl Gene ID:

ENSAPLG00000002969

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003044

17228952 - 17245087

16136