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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17230906_17231708_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17230906 - 17231708
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
TTTTAACTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATATTTTTAACT
Flanking Amino Acid:
KTVTVPVLSSDSKNIFQYTS
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.4
0.71
0.8
79
34.3
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
78.6
0.98
1
86.73
32.4

Associated Gene:

Gene:
SSX2IP
Ensembl Gene ID:
ENSAPLG00000002969
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003044
17228952 - 17245087
16136