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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17231876_17232087_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17231876 - 17232087
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
TGTCTTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCTTTCACC
Flanking Amino Acid:
IEQSISYLNRELTTLGFPSI
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
59.7
46.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.9
0.61
0.9
70.7
39.9
Minor 5ss
36.8
-1.5
3
39.3
46
Minor BPS
68.6
0.57
1.7
77.71
38.7

Associated Gene:

Gene:
SSX2IP
Ensembl Gene ID:
ENSAPLG00000002969
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003044
17228952 - 17245087
16136