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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17235391_17236262_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17235391 - 17236262
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGCTTTGAAAT
Flanking Amino Acid:
LVMNKKDKKIAMEVLNYVGR
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
87.5
0.84
0.7
82
28.7
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
49.5
0.04
1.5
65.65
38.7

Associated Gene:

Gene:
SSX2IP
Ensembl Gene ID:
ENSAPLG00000002969
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003044
17228952 - 17245087
16136