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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17236596_17238326_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17236596 - 17238326
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTACTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTACTTTTACA
Flanking Amino Acid:
KPKERSEDGPVLSDLEEDIG
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.4
0.8
0.8
79.5
32.4
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
62.5
0.39
1.7
71.81
40.2

Associated Gene:

Gene:
SSX2IP
Ensembl Gene ID:
ENSAPLG00000002969
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003044
17228952 - 17245087
16136