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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17238478_17239985_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17238478 - 17239985
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGATT
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTTGTTCTAAGT
Flanking Amino Acid:
KNHVEKLDNQVSRVHSRALD
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
80.5
33.5
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
78.9
0.65
0.7
78
23.9
Minor 5ss
32.8
-2
3.3
48.4
47.4
Minor BPS
49.7
0.06
2
75.41
41.9

Associated Gene:

Gene:
SSX2IP
Ensembl Gene ID:
ENSAPLG00000002969
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003044
17228952 - 17245087
16136