About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17240724_17242336_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17240724 - 17242336
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAGAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TAAGTGTAAACT
Flanking Amino Acid:
TEAAIRLGLERKAFEEDRGA
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.9
33.2
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
35.9
-1.6
3.3
47
48.4
Minor BPS
45.1
-0.2
2.3
65.03
45.5

Associated Gene:

Gene:
SSX2IP
Ensembl Gene ID:
ENSAPLG00000002969
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003044
17228952 - 17245087
16136