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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17242449_17243860_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17242449 - 17243860
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTATGCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAT
Flanking Amino Acid:
NVTTSSAFLGSSDQDGWLLN
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
93.8
19.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.9
0.43
0.9
59.1
42.7
Minor 5ss
33.1
-1.9
4
51.7
39.1
Minor BPS
64.9
0.55
1.4
78.42
37.5

Associated Gene:

Gene:
SSX2IP
Ensembl Gene ID:
ENSAPLG00000002969
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003044
17228952 - 17245087
16136