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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17249482_17249595_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17249482 - 17249595
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTACTTACGT
Flanking Amino Acid:
IILALVLTLVGSQKFDIDPG
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
88.7
0.87
0.7
84.1
30.7
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
54.1
0.21
2.1
77.67
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016418
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020487
17249442 - 17270914
21473