Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17249617_17249721_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17249617 - 17249721

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTATTTCCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

CTATTGTGAAAA

Flanking Amino Acid:

TLVGSQKFDIDPGFSSRKSY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

31.9

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

81.9

0.72

0.8

31.5

Minor 5ss

32.5

-2

3.2

40.8

45.4

Minor BPS

45.2

-0.3

2.2

57.84

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020487

17249442 - 17270914

21473